Add .gitignore, small upate on AlcapSimulationReport

.gitignore

@@ -0,0 +1,8 @@
+*.aux
+*.nav
+*.toc
+*.log
+*.out
+*.snm
+*.synctex*
+*.DS_Store

AlCapSimulationReport/Makefile

@@ -1,8 +1,8 @@
 ALL: report.pdf
 
 %.pdf: %.tex Makefile *.sty
-	#pdflatex --enable-write18 $< &&	pdflatex $< && pdflatex $<
-	pdflatex  $< 
+	pdflatex --enable-write18 $< &&	pdflatex $< && pdflatex $<
+	#pdflatex  $< 
 
 clean:
 	  rm -f *.aux	*.bbl	*.blg	*.log	poster.pdf *.nav *.out *.snm *.toc

AlCapSimulationReport/report.tex

@@ -1,6 +1,7 @@
 \documentclass[a4paper,11pt]{article}
 \usepackage[utf8x]{inputenc}
 \usepackage{ucs}
+\usepackage{hyperref}
 \usepackage{amsmath}
 \usepackage{amsfonts}
 \usepackage{amssymb}
@@ -45,9 +46,14 @@ package consists of:
  There is
 a small gap of 1 mm between the detectors in each dE/dx package, and distance
 from the beam counter to beam window is 5 mm. The germanium detector
-I used is just a simple cylinder.  I have asked Malachi (from PNNL) to
-implement a more realistic geometry for it based on the detector PNNL group
-has.
+I used is just a simple cylinder. Some parameters of the germanium detector are
+in this note of Frederik:
+\url{https://muon.npl.washington.edu/elog/mu2e/Capture2012/79}
+
+Physics list in use is the LHEP\_EMV because it is the fastest one. (see page
+5 in this presentation:
+	\url{http://geant4.slac.stanford.edu/SLACTutorial09/ChoosingPhysicsList.pdf})
+
 \begin{figure}[htpb]
 	\centering
 	\includegraphics[width=0.55\textwidth]{figs/geo_cut}\includegraphics[width=0.45\textwidth]{figs/geo_top}
@@ -295,9 +301,8 @@ Note:
 %\end{figure}
 
 \section{Side notes on structure of the output ROOT file}
-I used ROOT TObject to construct the output of the simulation (as pointed out
-by Malachi, this is not convenient for analysing).
-An event contains following information:
+I used ROOT TObject to construct the output of the simulation (this is not
+really convenient for analysing).  An event contains following information:
 \begin{itemize}
 	\item event id,
 	\item deposited energies in all detectors and target,
@@ -312,4 +317,9 @@ An event contains following information:
 		\end{itemize}
 \end{itemize}
 
+\section{To do}
+\begin{itemize}
+	\item optimization of geometry
+	\item digitization of output data, feeding to DAQ and analyzer, if possible
+\end{itemize}
 \end{document}