From b32f8ecacdb4da942ae295d3e5049c27e545e037 Mon Sep 17 00:00:00 2001
From: Nam Tran <thnam.me@gmail.com>
Date: Fri, 31 Mar 2017 13:19:20 -0400
Subject: [PATCH] progress saved stm_study report

---
 stm_study_201611/stm_study.tex | 41 +++++++++++++++++++++++++---------
 1 file changed, 31 insertions(+), 10 deletions(-)

diff --git a/stm_study_201611/stm_study.tex b/stm_study_201611/stm_study.tex
index 5868fc0..3834972 100644
--- a/stm_study_201611/stm_study.tex
+++ b/stm_study_201611/stm_study.tex
@@ -17,7 +17,7 @@
 \usepackage{minted}
 \usemintedstyle{perldoc}
 
-\usepackage{mdframed}
+\usepackage[framemethod=tikz]{mdframed}
 
 \definecolor{greybg}{rgb}{0.25,0.25,0.25}
 \definecolor{yellowbg}{rgb}{0.91, 0.84, 0.42}
@@ -25,9 +25,9 @@
 
 \mdfsetup{%
   middlelinecolor=red,
-  middlelinewidth=2pt,
+  middlelinewidth=1pt,
   backgroundcolor=yellow!40,
-  roundcorner=20pt}
+  roundcorner=8pt}
 
 % \DeclareSIUnit\eVperc{\eV\per\clight}
 % \DeclareSIUnit\clight{\text{\ensuremath{c}}}
@@ -136,7 +136,7 @@ The simulation and analysis code are located at:
 
 % \lstinputlisting[language=bash,frame=single]{listings/code_dir_tree.sh}
 \begin{mdframed}
-  \inputminted{bash}{listings/code_dir_tree.sh}
+  \inputminted[fontsize=\footnotesize]{bash}{listings/code_dir_tree.sh}
 \end{mdframed}
 
 \texttt{step00} contains configuration files for this simulation and a script to
@@ -201,24 +201,45 @@ The muonic energy levels and transition probabilities were calculated using
 a simple model described by Mukhopadhyay~\cite{Mukhopadhyay.1977}.
 
 \begin{itemize}
-  \item Energies of K-shell electrons were precisely corrected based on
-    that of hydrogen atom, taking finite size of the nucleus into account
+  \item Energy of K-shell electrons are precisely corrected based on
+    that of hydrogen atom, taking finite size of the nucleus into account:
     % \lstinputlisting[
       % language=c++, firstline=64, lastline=93,firstnumber=64,
       % breaklines=true, breakatwhitespace=true,
       % frame=single]{listings/G4EmCaptureCascade.cc}
-
       \begin{mdframed}
         \inputminted[
           breaklines=true,
           stepnumber=5,
           linenos=true,
           firstline=64,
-          % fontsize=\footnotesize,
+          fontsize=\footnotesize,
           lastline=93]{c++}{listings/G4EmCaptureCascade.cc}
-        
       \end{mdframed}
-  \item Energies of 
+  \item Energy of K-shell muons are calculated from energy of K-shell
+    electrons:
+      \begin{mdframed}
+        \inputminted[
+          breaklines=true,
+          stepnumber=5,
+          linenos=true,
+          fontsize=\footnotesize,
+          firstline=118,
+          lastline=122]{c++}{listings/G4EmCaptureCascade.cc}
+      \end{mdframed}
+    \item Energies of muons on other shells are calculated by scaling from that
+      of K-shell muons:
+      \begin{mdframed}
+        \inputminted[
+          breaklines=true,
+          stepnumber=5,
+          linenos=true,
+          fontsize=\footnotesize,
+          firstline=123,
+          lastline=125]{c++}{listings/G4EmCaptureCascade.cc}
+      \end{mdframed}
+
+
 \end{itemize}
 
 \bibliographystyle{h-physrev}